MolNFT v1 · #173044 · protein
Zebrafish ret cadherin like domains 1 to 4.
7AMK: “Zebrafish ret cadherin like domains 1 to 4.”. X-ray diffraction, 5 ligands (NAG, FUC, MAN). MolNFT v1 #173044 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7AMK
- Type
- protein
- Length
- 948 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A8E7C6
- Ligands
- NAG, FUC, MAN, BMA, CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 476 | — | A8E7C6 |
| B | — | protein | 472 | — | A8E7C6 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 21 copies · chains A, B
- FUC · alpha-L-fucopyranose · sugar · 6 copies · chains A, B
- MAN · alpha-D-mannopyranose · sugar · 5 copies · chains B
- BMA · beta-D-mannopyranose · sugar · 4 copies
- CA · Calcium ion · metal · 6 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · 10 copies · chains A, B
- PGE · Triethylene glycol · additive · 5 copies · chains A, B
- GOL · Glycerol · additive · 4 copies · chains A, B
- MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7AMK · Zebrafish RET Cadherin Like Domains 1 to 4. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8E7C6
- Elsewhere: RCSB PDB 7AMK · PDBe 7AMK · UniProt A8E7C6
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