MolNFT v1 · #172979 · protein
Structure of a complement factor-receptor complex
7AKK: “Structure of a complement factor-receptor complex”. X-ray diffraction, 5 ligands (NAG, MAN, BMA). MolNFT v1 #172979 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7AKK
- Type
- protein
- Length
- 3,006 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P01024, P11215
- Ligands
- NAG, MAN, BMA, K, MG
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, C | — | protein | 645 | — | P01024 |
| A | — | protein | 842 | — | P01024 |
| D, H | — | protein | 185 | — | P11215 |
| E | — | protein | 504 | — | P01024 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 5 copies · chains B, C, E
- MAN · alpha-D-mannopyranose · sugar · 2 copies
- BMA · beta-D-mannopyranose · sugar
- K · Potassium ion · metal · 2 copies · chains B, A, C, E
- MG · Magnesium ion · metal · 2 copies · chains A, D, H
- GOL · Glycerol · additive · 3 copies · chains B, C, E
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7AKK · Structure of a complement factor-receptor complex · the same entry in another collection · chain H against H, TM-score 1.00
- P01024 · AlphaFold monomer V2.0 prediction for complement C3 (P01024) · a predicted model of the same protein · chain C against A, TM-score 0.97
- P11215 · AlphaFold monomer V2.0 prediction for integrin alpha-M (P11215) · a predicted model of the same protein · chain D against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P01024
- Every structure of UniProt P11215
- Elsewhere: RCSB PDB 7AKK · PDBe 7AKK · UniProt P01024 · UniProt P11215
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