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MolNFT v1 · #172900 · protein

Cryo-EM structure of F-actin stabilized by cis-optojasp-8

7AHN: “Cryo-EM structure of F-actin stabilized by cis-optojasp-8”. Electron microscopy, 4 ligands (ADP, RLZ, MG). MolNFT v1 #172900 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
7AHN
Type
protein
Length
1,835 residues
Chains
5
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P68135
Ligands
ADP, RLZ, MG, PO4

Structure

electron microscopy · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
C, A, E, D, B—protein367—P68135

Ligands and binding sites

  • ADP · Adenosine-5'-diphosphate · ligand · 5 copies · chains C, A, E, D, B
  • RLZ · ~{N}-[4-[(4~{R},7~{R},10~{S},13~{S},15~{E},19~{S})-4-(4-hydroxyphenyl)-7-(1~{H}-indol-3-ylmethyl)-8,13,15, 19-tetramethyl-2,6,9,12-tetrakis(oxidanylidene)-1-oxa-5,8,11-triazacyclononadec-15-en-10-yl]butyl]-~{N}'-[5-methoxy-2-[(~{Z})-(3,4,5-trimethoxyphenyl) diazenyl]phenyl]butanediamide · ligand · 5 copies · chains C, E, D, A, B
  • MG · Magnesium ion · metal · 5 copies · chains C, A, E, D, B
  • PO4 · Phosphate ion · ion · 5 copies · chains C, A, E, D, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7AHN · Cryo-EM structure of F-actin stabilized by cis-optoJASP-8 · the same entry in another collection · chain B against B, TM-score 1.00
  • P68135 · AlphaFold monomer V2.0 prediction for actin, alpha skeletal muscle (P68135) · a predicted model of the same protein · chain B against A, TM-score 0.96

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