MolNFT v1 · #172852 · protein
Structure of the laspartomycin C double mutant G4D D-allo-THR9D-dap in complex with geranyl phosphate
7AG5: “Structure of the laspartomycin C double mutant G4D D-allo-THR9D-dap in complex with geranyl phosphate”. X-ray diffraction, 3 ligands (RDZ, 9GE, CA). MolNFT v1 #172852 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7AG5
- Type
- protein
- Length
- 11 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Laspartomycin C double mutant G4D D-allo-THR9D-dap
- Ligands
- RDZ, 9GE, CA
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Laspartomycin C double mutant G4D D-allo-THR9D-dap | protein | 11 | 0% helix, 0% strand | — |
Ligands and binding sites
- RDZ · Geranyl phosphate · ligand · chains A
- 9GE · (~{E})-13-methyltetradec-2-enoic acid · ligand · chains A
- CA · Calcium ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 3 modified, 1 covalent (nonstandard, covalent ligand).
Compared structures
- 7AG5 · Structure of the Laspartomycin C double mutant G4D D-allo-Thr9D-Dap in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7AG5 · PDBe 7AG5
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