MolNFT v1 · #172841 · protein

The structure of artemis variant D37A

7AFS · Protein artemis: “The structure of artemis variant D37A”. X-ray diffraction, 2 ligands (NI, ZN), 2 pockets (best druggability 0.58). MolNFT v1 #172841 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 7AFS
Type: protein
Length: 359 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein artemis
EC: 3.1.-.-
UniProt: Q96SD1
Ligands: NI, ZN
Pockets: 2 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 30% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein artemis (EC 3.1.-.-)	protein	359	30% helix, 25% strand	Q96SD1

Ligands and binding sites

NI · Nickel (II) ion · metal · chains A
ZN · Zinc ion · metal · chains A
EDO · 1,2-ethanediol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	205	0.58	0.80	28	empty
2	148	0.43	0.75	33	empty

Compared structures

7AFS · The structure of Artemis variant D37A · the same entry in another collection · chain A against A, TM-score 1.00
Q96SD1 · AlphaFold monomer V2.0 prediction for protein artemis (Q96SD1) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q96SD1
Elsewhere: RCSB PDB 7AFS · PDBe 7AFS · UniProt Q96SD1

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