MolNFT v1 · #172092 · protein
Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with N-acetylalanine ligand bound
6ZR0: “Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with N-acetylalanine ligand bound”. X-ray diffraction, 4 ligands (NAG, FUC, CA). MolNFT v1 #172092 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6ZR0
- Type
- protein
- Length
- 438 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8N539
- Ligands
- NAG, FUC, CA, SO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 219 | — | Q8N539 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A, B
- FUC · alpha-L-fucopyranose · sugar · chains B
- CA · Calcium ion · metal · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
- ACY · Acetic acid · additive · 3 copies · chains A, B
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6ZR0 · Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8N539 · AlphaFold monomer V2.0 prediction for fibrinogen C domain-containing protein 1 (Q8N539) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N539
- Elsewhere: RCSB PDB 6ZR0 · PDBe 6ZR0 · UniProt Q8N539
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