MolNFT v1 · #172083 · protein
Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with glcnac ligand bound
6ZQR · Fibrinogen C domain-containing protein 1: “Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with glcnac ligand bound”. X-ray diffraction, 4 ligands (NAG, FUC, CA). MolNFT v1 #172083 on GenesisL1: 3D…
- PDB
- 6ZQR
- Type
- protein
- Length
- 438 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fibrinogen C domain-containing protein 1
- UniProt
- Q8N539
- Ligands
- NAG, FUC, CA, SO4
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Fibrinogen C domain-containing protein 1 | protein | 219 | 16% helix, 32% strand | Q8N539 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
- FUC · alpha-L-fucopyranose · sugar · 2 copies
- CA · Calcium ion · metal · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 4 copies · chains A, B
- ACY · Acetic acid · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 4 disulfide, 1 glycan (disulfide, N-glycosylation).
Compared structures
- 6ZQR · Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with GlcNAc… · the same entry in another collection · chain A against A, TM-score 1.00
- Q8N539 · AlphaFold monomer V2.0 prediction for fibrinogen C domain-containing protein 1 (Q8N539) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8N539
- Elsewhere: RCSB PDB 6ZQR · PDBe 6ZQR · UniProt Q8N539
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