MolNFT v1 · #171576 · protein + DNA + RNA
Transcription termination intermediate complex 5
6Z9T: “Transcription termination intermediate complex 5”. Electron microscopy, 6 ligands (ADP, BEF, DT). MolNFT v1 #171576 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Z9T
- Type
- protein + DNA + RNA
- Length
- 6,398 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0A0GPI6, C3SSN7, P0A7Z4, P0A800, P0A8V4, C3SIA2
- Ligands
- ADP, BEF, DT, DA, MG, ZN
Structure
electron microscopy · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| f, a, b, c, d, e | — | protein | 417 | — | A0A0A0GPI6 |
| A | — | protein | 495 | — | C3SSN7 |
| U | — | protein | 235 | — | P0A7Z4 |
| V | — | protein | 321 | — | P0A7Z4 |
| W | — | protein | 79 | — | P0A800 |
| X | — | protein | 1340 | — | P0A8V4 |
| Y | — | protein | 1343 | — | C3SIA2 |
| L | — | dna | 34 | — | — |
| K | — | dna | 21 | — | — |
| R | — | rna | 28 | — | — |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 5 copies · chains f, a, b, c, d, e
- BEF · Beryllium trifluoride ion · ligand · 5 copies · chains f, a, b, c, d, e
- DT · Thymidine-5'-monophosphate · ligand · chains Y, L
- DA · 2'-deoxyadenosine-5'-monophosphate · ligand · chains Y
- MG · Magnesium ion · metal · 6 copies · chains a, b, c, d, e, Y
- ZN · Zinc ion · metal · 2 copies · chains Y
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A0GPI6
- Every structure of UniProt C3SSN7
- Every structure of UniProt P0A7Z4
- Every structure of UniProt P0A800
- Every structure of UniProt P0A8V4
- Every structure of UniProt C3SIA2
- Elsewhere: RCSB PDB 6Z9T · PDBe 6Z9T · UniProt A0A0A0GPI6 · UniProt C3SSN7 · UniProt P0A7Z4 · UniProt P0A800 · UniProt P0A8V4 · UniProt C3SIA2
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