MolNFT v1 · #171575 · protein + DNA + RNA
Transcription termination intermediate complex 4
6Z9S: “Transcription termination intermediate complex 4”. Electron microscopy, 4 ligands (ADP, BEF, MG). MolNFT v1 #171575 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Z9S
- Type
- protein + DNA + RNA
- Length
- 6,419 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0A0GPI6, C3SSN7, P0A7Z4, P0A800, P0A8V4, C3SIA2
- Ligands
- ADP, BEF, MG, ZN
Structure
electron microscopy · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| f, a, b, c, d, e | — | protein | 417 | — | A0A0A0GPI6 |
| A | — | protein | 495 | — | C3SSN7 |
| U | — | protein | 235 | — | P0A7Z4 |
| V | — | protein | 321 | — | P0A7Z4 |
| W | — | protein | 79 | — | P0A800 |
| X | — | protein | 1340 | — | P0A8V4 |
| Y | — | protein | 1358 | — | C3SIA2 |
| K | — | dna | 26 | — | — |
| L | — | dna | 35 | — | — |
| R | — | rna | 28 | — | — |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · 5 copies · chains f, a, b, c, d, e
- BEF · Beryllium trifluoride ion · ligand · 5 copies · chains f, a, b, c, d, e
- MG · Magnesium ion · metal · 6 copies · chains a, b, c, d, e, Y, R
- ZN · Zinc ion · metal · 2 copies · chains Y
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0A0GPI6
- Every structure of UniProt C3SSN7
- Every structure of UniProt P0A7Z4
- Every structure of UniProt P0A800
- Every structure of UniProt P0A8V4
- Every structure of UniProt C3SIA2
- Elsewhere: RCSB PDB 6Z9S · PDBe 6Z9S · UniProt A0A0A0GPI6 · UniProt C3SSN7 · UniProt P0A7Z4 · UniProt P0A800 · UniProt P0A8V4 · UniProt C3SIA2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.