MolNFT v1 · #171571 · protein

Structure of [nifese] hydrogenase G491S variant from desulfovibrio vulgaris hildenborough pressurized with oxygen gas - structure G491A- O2-ld

6Z9O: “Structure of [nifese] hydrogenase G491S variant from desulfovibrio vulgaris hildenborough pressurized with…”. X-ray diffraction, 7 ligands (SF4, 6ML, FCO). MolNFT v1 #171571 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 6Z9O
Type: protein
Length: 761 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q72AS4, Q72AS3
Ligands: SF4, 6ML, FCO, NI, FE2, OXY, H2S

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	279	—	Q72AS4
B	—	protein	482	—	Q72AS3

Ligands and binding sites

SF4 · Iron/sulfur cluster · ligand · 3 copies · chains A, B
6ML · oxygen-damaged SF4 · ligand · chains A, B
FCO · Carbonmonoxide-(dicyano) iron · ligand · chains B
NI · Nickel (II) ion · metal · chains B
FE2 · Fe (II) ion · metal · chains B
OXY · Oxygen molecule · ion · 6 copies · chains A, B
H2S · Hydrosulfuric acid · ion · 2 copies · chains B
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6Z9O · Structure of [NiFeSe] hydrogenase G491S variant from Desulfovibrio vulgaris Hildenborough… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q72AS4
Every structure of UniProt Q72AS3
Elsewhere: RCSB PDB 6Z9O · PDBe 6Z9O · UniProt Q72AS4 · UniProt Q72AS3

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