MolNFT v1 · #171537 · protein
Structure of [nifese] hydrogenase G491A variant from desulfovibrio vulgaris hildenborough pressurized with krypton gas - structure G491A-kr
6Z8O: “Structure of [nifese] hydrogenase G491A variant from desulfovibrio vulgaris hildenborough pressurized with…”. X-ray diffraction, 8 ligands (SF4, 6ML, FCO). MolNFT v1 #171537 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6Z8O
- Type
- protein
- Length
- 1,517 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q72AS4, Q72AS3
- Ligands
- SF4, 6ML, FCO, NI, FE2, KR, H2S, CL
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 277 | — | Q72AS4 |
| B, D | — | protein | 481 | — | Q72AS3 |
| C | — | protein | 278 | — | Q72AS4 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 6 copies · chains A, B, C, D
- 6ML · oxygen-damaged SF4 · ligand · 2 copies · chains A, B, C, D
- FCO · Carbonmonoxide-(dicyano) iron · ligand · 2 copies · chains B, D
- NI · Nickel (II) ion · metal · 2 copies · chains B, D
- FE2 · Fe (II) ion · metal · 2 copies · chains B, D
- KR · Krypton · ion · 20 copies · chains A, B, C, D
- H2S · Hydrosulfuric acid · ion · 2 copies · chains B, D
- CL · Chloride ion · ion · 2 copies · chains B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Z8O · Structure of [NiFeSe] hydrogenase G491A variant from Desulfovibrio vulgaris Hildenborough… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q72AS4
- Every structure of UniProt Q72AS3
- Elsewhere: RCSB PDB 6Z8O · PDBe 6Z8O · UniProt Q72AS4 · UniProt Q72AS3
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