MolNFT v1 · #171489 · protein
Galectin-8 N-terminal domain in complex with a sulfatide mimicking a sphingolipid
6Z6Y: “Galectin-8 N-terminal domain in complex with a sulfatide mimicking a sphingolipid”. X-ray diffraction, 1 ligand (L4L). MolNFT v1 #171489 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Z6Y
- Type
- protein
- Length
- 156 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O00214
- Ligands
- L4L
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 156 | — | O00214 |
Ligands and binding sites
- L4L · [(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{S})-2-acetamido-3-oxidanylidene-pent-4-enoxy]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-4-yl] hydrogen sulfate · ligand · chains A
- ACT · Acetate ion · additive · 6 copies · chains A
- PGE · Triethylene glycol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Z6Y · Galectin-8 N-terminal domain in complex with a sulfatide mimicking a sphingolipid · the same entry in another collection · chain A against A, TM-score 1.00
- O00214 · AlphaFold monomer V2.0 prediction for galectin-8 (O00214) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O00214
- Elsewhere: RCSB PDB 6Z6Y · PDBe 6Z6Y · UniProt O00214
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