MolNFT v1 · #171397 · protein
VEGF-a 13:107 crystallized with 2C bicyclic peptide
6Z3F: “VEGF-a 13:107 crystallized with 2C bicyclic peptide”. X-ray diffraction, 1 ligand (NH2). MolNFT v1 #171397 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Z3F
- Type
- protein
- Length
- 204 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P15692
- Ligands
- NH2
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| P | — | protein | 14 | — | — |
| V, W | — | protein | 95 | — | P15692 |
Ligands and binding sites
- NH2 · Amino group · ion · chains P
- ACY · Acetic acid · additive · 5 copies · chains V, W
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains P, V
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Z3F · VEGF-A 13:107 crystallized with 2C bicyclic peptide · the same entry in another collection · chain P against P, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P15692
- Elsewhere: RCSB PDB 6Z3F · PDBe 6Z3F · UniProt P15692
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