MolNFT v1 · #171382 · protein
MEC1-DDC2 (F2244L mutant) in complex with mg AMP-pnp
6Z2W: “MEC1-DDC2 (F2244L mutant) in complex with mg AMP-pnp”. Electron microscopy, 3 ligands (ANP, MG, ZN). MolNFT v1 #171382 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Z2W
- Type
- protein
- Length
- 5,766 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q04377, P38111
- Ligands
- ANP, MG, ZN
Structure
electron microscopy · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D, C | — | protein | 558 | — | Q04377 |
| E, F | — | protein | 2325 | — | P38111 |
Ligands and binding sites
- ANP · Phosphoaminophosphonic acid-adenylate ester · ligand · 2 copies · chains E, F
- MG · Magnesium ion · metal · 4 copies · chains E, F
- ZN · Zinc ion · metal · 2 copies · chains E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Z2W · Mec1-Ddc2 (F2244L mutant) in complex with Mg AMP-PNP · the same entry in another collection · chain D against D, TM-score 1.00
- P38111 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase MEC1 (P38111) · a predicted model of the same protein · chain E against A, TM-score 0.97
- Q04377 · AlphaFold monomer V2.0 prediction for DNA damage checkpoint protein LCD1 (Q04377) · a predicted model of the same protein · chain D against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q04377
- Every structure of UniProt P38111
- Elsewhere: RCSB PDB 6Z2W · PDBe 6Z2W · UniProt Q04377 · UniProt P38111
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