MolNFT v1 · #171377 · protein
Crystal structure of wild type ogpa from akkermansia muciniphila in complex with an O-glycopeptide (galgalnac-ts) product
6Z2Q: “Crystal structure of wild type ogpa from akkermansia muciniphila in complex with an O-glycopeptide…”. X-ray diffraction, 3 ligands (A2G, GAL, ZN). MolNFT v1 #171377 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6Z2Q
- Type
- protein
- Length
- 357 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B2UR60
- Ligands
- A2G, GAL, ZN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 355 | — | B2UR60 |
| D | — | protein | 2 | — | — |
Ligands and binding sites
- A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · chains A, D
- GAL · beta-D-galactopyranose · sugar · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
- ACY · Acetic acid · additive · chains A, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Z2Q · Crystal structure of wild type OgpA from Akkermansia muciniphila in complex with an… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2UR60
- Elsewhere: RCSB PDB 6Z2Q · PDBe 6Z2Q · UniProt B2UR60
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