MolNFT v1 · #171376 · protein
Crystal structure of catalytic inactive ogpa from akkermansia muciniphila in complex with an O-glycopeptide (glycodrosocin) substrate
6Z2P: “Crystal structure of catalytic inactive ogpa from akkermansia muciniphila in complex with an O-glycopeptide…”. X-ray diffraction, 3 ligands (A2G, GAL, CA). MolNFT v1 #171376 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6Z2P
- Type
- protein
- Length
- 366 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B2UR60
- Ligands
- A2G, GAL, CA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 356 | — | B2UR60 |
| C | — | protein | 10 | — | — |
Ligands and binding sites
- A2G · 2-acetamido-2-deoxy-alpha-D-galactopyranose · sugar · chains A, C
- GAL · beta-D-galactopyranose · sugar · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Z2P · Crystal structure of catalytic inactive OgpA from Akkermansia muciniphila in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2UR60
- Elsewhere: RCSB PDB 6Z2P · PDBe 6Z2P · UniProt B2UR60
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