MolNFT v1 · #170970 · protein
Structure of SAMM50 lir bound to GABARAPL1
6YOO: “Structure of SAMM50 lir bound to GABARAPL1”. X-ray diffraction, 2 ligands (ZN, CL). MolNFT v1 #170970 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YOO
- Type
- protein
- Length
- 128 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9H0R8, Q9Y512
- Ligands
- ZN, CL
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 118 | — | Q9H0R8 |
| B | — | protein | 10 | — | Q9Y512 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
- CL · Chloride ion · ion · chains A, B
- EDO · 1,2-ethanediol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YOO · Structure of SAMM50 LIR bound to GABARAPL1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9H0R8 · AlphaFold monomer V2.0 prediction for gamma-aminobutyric acid receptor-associated… · a predicted model of the same protein · chain A against A, TM-score 0.96
- Q9Y512 · AlphaFold monomer V2.0 prediction for sorting and assembly machinery component 50 homolog… · a predicted model of the same protein · chain B against A, TM-score 0.38
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9H0R8
- Every structure of UniProt Q9Y512
- Elsewhere: RCSB PDB 6YOO · PDBe 6YOO · UniProt Q9H0R8 · UniProt Q9Y512
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