MolNFT v1 · #419890 · protein
AlphaFold monomer V2.0 prediction for sorting and assembly machinery component 50 homolog (Q9Y512)
Q9Y512: “AlphaFold monomer V2.0 prediction for sorting and assembly machinery component 50 homolog (Q9Y512)”. 4 pockets (best druggability 0.71). MolNFT v1 #419890 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- Q9Y512
- Type
- protein
- Length
- 469 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x35612D34a32C306CA4fc1edA9360D1F717e25950
- Molecule
- Sorting and assembly machinery component 50 homolog
- UniProt
- Q9Y512
- Pockets
- 4 · best druggability 0.71
Structure
1 distinct chain · 10% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sorting and assembly machinery component 50 homolog | protein | 469 | 10% helix, 52% strand | Q9Y512 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 988 | 0.71 | 0.75 | 76 | empty |
| 2 | 81 | 0.44 | 0.81 | 14 | empty |
| 3 | 52 | 0.28 | 0.75 | 14 | empty |
| 4 | 53 | 0.26 | 0.72 | 16 | empty |
Compared structures
- 6YOP · Structure of SAMM50 lir bound to gabarap · an experimental structure of the same protein · chain A against A, TM-score 0.14
- 6YOP · Structure of SAMM50 LIR bound to GABARAP · an experimental structure of the same protein · chain A against A, TM-score 0.14
- 6YOO · Structure of SAMM50 lir bound to GABARAPL1 · an experimental structure of the same protein · chain A against B, TM-score 0.02
- 6YOO · Structure of SAMM50 LIR bound to GABARAPL1 · an experimental structure of the same protein · chain A against B, TM-score 0.02
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y512
- Elsewhere: UniProt Q9Y512 · AlphaFold DB Q9Y512
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