Research workbench
AlphaFold monomer V2.0 prediction for sorting and assembly machinery component 50 homolog (Q9Y512)
Analyse AlphaFold monomer V2.0 prediction for sorting and assembly machinery component… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q9Y512
- Type
- protein
- Length
- 469 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x35612D34a32C306CA4fc1edA9360D1F717e25950
- Molecule
- Sorting and assembly machinery component 50 homolog
- UniProt
- Q9Y512
- Pockets
- 4 · best druggability 0.71
Structure
1 distinct chain · 10% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sorting and assembly machinery component 50 homolog | protein | 469 | 10% helix, 52% strand | Q9Y512 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 988 | 0.71 | 0.75 | 76 | empty |
| 2 | 81 | 0.44 | 0.81 | 14 | empty |
| 3 | 52 | 0.28 | 0.75 | 14 | empty |
| 4 | 53 | 0.26 | 0.72 | 16 | empty |
Compared structures
- 6YOP · Structure of SAMM50 lir bound to gabarap · an experimental structure of the same protein · chain A against A, TM-score 0.14
- 6YOP · Structure of SAMM50 LIR bound to GABARAP · an experimental structure of the same protein · chain A against A, TM-score 0.14
- 6YOO · Structure of SAMM50 lir bound to GABARAPL1 · an experimental structure of the same protein · chain A against B, TM-score 0.02
- 6YOO · Structure of SAMM50 LIR bound to GABARAPL1 · an experimental structure of the same protein · chain A against B, TM-score 0.02
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y512
- Elsewhere: UniProt Q9Y512 · AlphaFold DB Q9Y512
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