Structure of SAMM50 lir bound to GABARAPL1

Structure

x-ray diffraction · 2 distinct chains · 30% helix, 22% strand (DSSP).

Ligands and binding sites

• ZN · Zinc ion · metal · 2 copies · chains A, B
• CL · Chloride ion · ion · chains A, B
• EDO · 1,2-ethanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

• A–B · 576 Ų buried · 8 hydrogen bonds · protein-protein

Compared structures

• 6YOO · Structure of SAMM50 LIR bound to GABARAPL1 · the same entry in another collection · chain A against A, TM-score 1.00
• Q9H0R8 · AlphaFold monomer V2.0 prediction for gamma-aminobutyric acid receptor-associated… · a predicted model of the same protein · chain A against A, TM-score 0.96
• Q9Y512 · AlphaFold monomer V2.0 prediction for sorting and assembly machinery component 50 homolog… · a predicted model of the same protein · chain B against A, TM-score 0.38

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Every structure of UniProt Q9H0R8
• Every structure of UniProt Q9Y512
• Elsewhere: RCSB PDB 6YOO · PDBe 6YOO · UniProt Q9H0R8 · UniProt Q9Y512