MolNFT v1 · #170935 · protein
Crystal structure of YTHDC1 with compound DHU_DC1_068
6YNK: “Crystal structure of YTHDC1 with compound DHU_DC1_068”. X-ray diffraction, 2 ligands (P0K, SO4). MolNFT v1 #170935 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YNK
- Type
- protein
- Length
- 325 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q96MU7
- Ligands
- P0K, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 161 | — | Q96MU7 |
| B | — | protein | 164 | — | Q96MU7 |
Ligands and binding sites
- P0K · 6-[[furan-2-ylmethyl(methyl)amino]methyl]-5~{H}-pyrimidine-2,4-dione · ligand · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 8 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YNK · Crystal structure of YTHDC1 with compound DHU_DC1_068 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96MU7
- Elsewhere: RCSB PDB 6YNK · PDBe 6YNK · UniProt Q96MU7
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