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Ligand · P0K

P0K · 6-[[furan-2-ylmethyl(methyl)amino]methyl]-5~{H}-pyrimidine-2,4-dione

P0K, 6-[[furan-2-ylmethyl(methyl)amino]methyl]-5~{H}-pyrimidine-2,4-dione (C11 H13 N3 O3, 235.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the…

Component
P0K
Formula
C11 H13 N3 O3
Class
ligand
Structures
2
PDB entries
1

Binding sites

P0K in 2 structures; the first of them:

  • 6YNK · Crystal structure of YTHDC1 with compound DHU_DC1_068 · P0K A601 · binds ILE360, LYS361, SER362, ASN363, ASN367, TRP377, SER378, THR379 and 7 more
  • 6YNK · Crystal structure of YTHDC1 with compound DHU_DC1_068 · P0K A601 · binds ILE360, LYS361, SER362, ASN363, ASN367, TRP377, SER378, THR379 and 7 more

Residues it binds most

LEU 4, ASN 4, SER 4, TRP 4, ARG 4, ASP 4, ILE 4, LYS 4, MET 4, PRO 4 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • PEG · Di(hydroxyethyl)ether

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