MolNFT v1 · #170930 · protein
GAPDH purified from the supernatant of HEK293F cells: crystal form 3 of 4.
6YNF: “GAPDH purified from the supernatant of HEK293F cells: crystal form 3 of 4.”. X-ray diffraction. MolNFT v1 #170930 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YNF
- Type
- protein
- Length
- 2,668 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P04406
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, F | — | protein | 334 | — | P04406 |
| D, E, G, H | — | protein | 333 | — | P04406 |
Ligands and binding sites
- XPE · 3,6,9,12,15,18,21,24,27-nonaoxanonacosane-1,29-diol · additive · 7 copies · chains A, B, D, E, F, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YNF · GAPDH purified from the supernatant of HEK293F cells: crystal form 3 of 4. · the same entry in another collection · chain H against H, TM-score 1.00
- P04406 · AlphaFold monomer V2.0 prediction for glyceraldehyde-3-phosphate dehydrogenase (P04406) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04406
- Elsewhere: RCSB PDB 6YNF · PDBe 6YNF · UniProt P04406
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