MolNFT v1 · #170804 · protein

Lamin a COIL2 dimer stabilized by N-terminal capping

6YJD · Capsid assembly scaffolding PROTEIN,PRELAMIN-A/C: “Lamin a COIL2 dimer stabilized by N-terminal capping”. X-ray diffraction, 2 ligands (NI, CL). MolNFT v1 #170804 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6YJD
Type: protein
Length: 104 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsid assembly scaffolding PROTEIN,PRELAMIN-A/C
UniProt: P13848, P02545
Ligands: NI, CL

Structure

x-ray diffraction · 1 distinct chain · 89% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Capsid assembly scaffolding PROTEIN,PRELAMIN-A/C	protein	104	89% helix, 0% strand	P13848, P02545

Ligands and binding sites

NI · Nickel (II) ion · metal · 2 copies · chains A
CL · Chloride ion · ion · chains A
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6YJD · Lamin A coil2 dimer stabilized by N-terminal capping · the same entry in another collection · chain A against A, TM-score 1.00
P02545 · AlphaFold monomer V2.0 prediction for prelamin-A/C (P02545) · a predicted model of the same protein · chain A against A, TM-score 0.69

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P13848
Every structure of UniProt P02545
Elsewhere: RCSB PDB 6YJD · PDBe 6YJD · UniProt P13848 · UniProt P02545

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