MolNFT v1 · #170635 · protein
Beta-phosphoglucomutase from lactococcus lactis with citrate, tris and acetate bound
6YDM: “Beta-phosphoglucomutase from lactococcus lactis with citrate, tris and acetate bound”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #170635 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6YDM
- Type
- protein
- Length
- 438 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P71447
- Ligands
- MG
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 219 | — | P71447 |
Ligands and binding sites
- MG · Magnesium ion · metal · 2 copies · chains A, B
- ACT · Acetate ion · additive · 2 copies · chains A, B
- CIT · Citric acid · additive · chains A
- PDO · 1,3-propandiol · additive · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains B
- EDO · 1,2-ethanediol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6YDM · beta-phosphoglucomutase from Lactococcus lactis with citrate, tris and acetate bound · the same entry in another collection · chain A against A, TM-score 1.00
- P71447 · AlphaFold monomer V2.0 prediction for beta-phosphoglucomutase (P71447) · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P71447
- Elsewhere: RCSB PDB 6YDM · PDBe 6YDM · UniProt P71447
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