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MolNFT v1 · #170553 · protein

Human octameric paics in complex with cair and saicar

6YB8: “Human octameric paics in complex with cair and saicar”. X-ray diffraction, 2 ligands (C2R, OK8). MolNFT v1 #170553 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6YB8
Type
protein
Length
838 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P22234
Ligands
C2R, OK8

Structure

x-ray diffraction · 1 distinct chain.

ChainMoleculeTypeResiduesSecondary structureUniProt
A, B—protein419—P22234

Ligands and binding sites

  • C2R · 5-amino-1-(5-O-phosphono-beta-D-ribofuranosyl)-1H-imidazole-4-carboxylic acid · ligand · 3 copies · chains A, B
  • OK8 · (2~{S})-2-[[5-azanyl-1-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]imidazol-4-yl]car bonylamino]butanedioic acid · ligand · chains A
  • EDO · 1,2-ethanediol · additive · 10 copies · chains A, B
  • IMD · Imidazole · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6YB8 · Human octameric PAICS in complex with CAIR and SAICAR · the same entry in another collection · chain A against A, TM-score 1.00
  • P22234 · AlphaFold monomer V2.0 prediction for multifunctional protein ADE2 (P22234) · a predicted model of the same protein · chain A against A, TM-score 0.99

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