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MolNFT v1 · #170432 · protein

Pseudomonas stutzeri nitrous oxide reductase mutant, H494A

6Y7E: “Pseudomonas stutzeri nitrous oxide reductase mutant, H494A”. X-ray diffraction, 5 ligands (CUA, ZN, NA). MolNFT v1 #170432 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6Y7E
Type
protein
Length
1,160 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
P19573
Ligands
CUA, ZN, NA, CA, CL

Structure

x-ray diffraction · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein572—P19573
B—protein588—P19573

Ligands and binding sites

  • CUA · Dinuclear copper ion · ligand · 2 copies · chains A, B
  • ZN · Zinc ion · metal · 3 copies · chains A, B
  • NA · Sodium ion · metal · 2 copies · chains A, B
  • CA · Calcium ion · metal · chains B
  • CL · Chloride ion · ion · 2 copies · chains A, B
  • FMT · Formic acid · additive · 4 copies · chains A, B
  • B3P · 2-[3-(2-hydroxy-1,1-dihydroxymethyl-ethylamino)-propylamino]-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A, B
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6Y7E · Pseudomonas stutzeri nitrous oxide reductase mutant, H494A · the same entry in another collection · chain A against A, TM-score 1.00
  • P19573 · AlphaFold monomer V2.0 prediction for nitrous-oxide reductase (P19573) · a predicted model of the same protein · chain A against A, TM-score 1.00

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