MolNFT v1 · #170228 · protein
Fucosylated bicyclic peptide BP71 bound to the fucose binding lectin lecb pa-iil from pseudomonas aeruginosa at 1.5 ångström resolution
6Y0U: “Fucosylated bicyclic peptide BP71 bound to the fucose binding lectin lecb pa-iil from pseudomonas aeruginosa…”. X-ray diffraction, 4 ligands (O65, ZDC, CA). MolNFT v1 #170228 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6Y0U
- Type
- protein
- Length
- 492 residues
- Chains
- 7
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A069Q9V4
- Ligands
- O65, ZDC, CA, NH2
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 114 | — | A0A069Q9V4 |
| E, F, H | — | protein | 12 | — | — |
Ligands and binding sites
- O65 · 3,5-bis(hydroxymethyl)-4-methyl-benzaldehyde · ligand · 3 copies · chains E, F, D, H
- ZDC · 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid · sugar · 4 copies · chains A, E, B, F, C, D, H
- CA · Calcium ion · metal · 8 copies · chains A, B, C, D
- NH2 · Amino group · ion · 3 copies · chains E, F, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6Y0U · Fucosylated Bicyclic peptide bp71 bound to the fucose binding lectin LecB PA-IIL from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A069Q9V4
- Elsewhere: RCSB PDB 6Y0U · PDBe 6Y0U · UniProt A0A069Q9V4
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