GL1X · GenesisL1 explorer

Ligand · O65

O65 · 3,5-bis(hydroxymethyl)-4-methyl-benzaldehyde

O65, 3,5-bis(hydroxymethyl)-4-methyl-benzaldehyde (C10 H12 O4, 196.2 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (5 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the…

Component
O65
Formula
C10 H12 O4
Class
ligand
Structures
5
PDB entries
5

Binding sites

O65 in 5 structures; the first of them:

  • 6Y0U · Fucosylated bicyclic peptide BP71 bound to the fucose binding lectin lecb pa-iil from… · O65 E102 · binds DLY2, DLY3, DLY6, CYS7, CYS10
  • 6Y0V · Fucosylated bicyclic peptide BP71 bound to the fucose binding lectin lecb pa-iil from… · O65 G102 · binds DLY2, DLY6, CYS7, CYS10, LEU11
  • 6Y13 · Bicyclic stapled peptide BP70 at 1.1 ångström resolution · O65 A101 · binds HIS2, ORN3, DAB6, CYS7, CYS10, TYR11
  • 6Y14 · Bicyclic peptide BP65 crystallized as racemic mixture at 0.9 ångström resolution · O65 A101 · binds LYS2, LYS3, LYS6, CYS7, CYS10, LEU11
  • 6Y1S · Bicyclic peptide BP70 in I4132 at 1.0 ångström resolution · O65 A1 · binds HIS2, ORN3, DAB6, CYS7, CYS10, TYR11

Residues it binds most

CYS 9, DLY 5, LYS 2, LEU 4, DAB 2, HIS 2, ORN 2, TYR 2, THR 1 (residue and the binding sites it lines).

Found with

  • NH2 · Amino group
  • CA · Calcium ion
  • ZDC · 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid
  • CIT · Citric acid

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.