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MolNFT v1 · #170151 · protein

Cap-binding domain of sftsv L protein

6XYA · RNA-dependent RNA polymerase: “Cap-binding domain of sftsv L protein”. X-ray diffraction, 2 ligands (MGP, NA). MolNFT v1 #170151 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6XYA
Type
protein
Length
112 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
RNA-dependent RNA polymerase
UniProt
F1BV96
Ligands
MGP, NA

Structure

x-ray diffraction · 1 distinct chain · 13% helix, 49% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
BRNA-dependent RNA polymeraseprotein11213% helix, 49% strandF1BV96

Ligands and binding sites

  • MGP · 7-methyl-guanosine-5'-triphosphate · ligand · chains B
  • NA · Sodium ion · metal · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6XYA · Cap-binding domain of SFTSV L protein · the same entry in another collection · chain B against B, TM-score 1.00

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