MolNFT v1 · #169956 · protein
Crystal structure of human VPS29 complexed with rapid-derived cyclic peptide rt-D1
6XS5: “Crystal structure of human VPS29 complexed with rapid-derived cyclic peptide rt-D1”. X-ray diffraction, 1 ligand (48V). MolNFT v1 #169956 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6XS5
- Type
- protein
- Length
- 199 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9UBQ0
- Ligands
- 48V
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 183 | — | Q9UBQ0 |
| B | — | protein | 16 | — | — |
Ligands and binding sites
- 48V · {[(2R)-2,3-diamino-3-oxopropyl]sulfanyl}acetic acid · ligand · chains B
- GOL · Glycerol · additive · 2 copies · chains A
- FMT · Formic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XS5 · Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-D1 · the same entry in another collection · chain A against A, TM-score 1.00
- Q9UBQ0 · AlphaFold monomer V2.0 prediction for vacuolar protein sorting- associated protein 29… · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UBQ0
- Elsewhere: RCSB PDB 6XS5 · PDBe 6XS5 · UniProt Q9UBQ0
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