MolNFT v1 · #169954 · protein
X-ray structure of the monoclinic crystal form at 2.48 a resolution of lipase from thermomyces (humicola) lanuginosa at 298 K
6XS3: “X-ray structure of the monoclinic crystal form at 2.48 a resolution of lipase from thermomyces (humicola)…”. X-ray diffraction, 5 ligands (OCA, LTV, NAG). MolNFT v1 #169954 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6XS3
- Type
- protein
- Length
- 1,614 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O59952
- Ligands
- OCA, LTV, NAG, CA, PO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, E, D, F | — | protein | 269 | — | O59952 |
Ligands and binding sites
- OCA · Octanoic acid (caprylic acid) · ligand · 6 copies · chains A, D, B, E, C, F
- LTV · 2-hydroxy-3-(octadecanoyloxy)propyl pentacosanoate · ligand · 6 copies · chains A, F, B, C, E, D
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains A, B, C, E, D, F
- CA · Calcium ion · metal · 8 copies · chains A, B, C, E, D, F
- PO4 · Phosphate ion · ion · 5 copies · chains A, B, E, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6XS3 · X-ray structure of the monoclinic crystal form at 2.48 A resolution of lipase from… · the same entry in another collection · chain F against F, TM-score 1.00
- O59952 · AlphaFold monomer V2.0 prediction for lipase (O59952) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O59952
- Elsewhere: RCSB PDB 6XS3 · PDBe 6XS3 · UniProt O59952
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