MolNFT v1 · #169740 · protein

Structure of the essential inner membrane lipopolysaccharide-pbga complex

6XLP: “Structure of the essential inner membrane lipopolysaccharide-pbga complex”. X-ray diffraction, 6 ligands (OLB, VJ4, VJ1). MolNFT v1 #169740 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6XLP
Type: protein
Length: 586 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: C3T3G2
Ligands: OLB, VJ4, VJ1, 3PE, KDO, SO4

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	586	—	C3T3G2

Ligands and binding sites

OLB · (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · ligand · 8 copies · chains A
VJ4 · 2-deoxy-2-{[(1S,3R)-1-hydroxy-3-(pentanoyloxy) undecyl]amino}-4-O-phosphono-alpha-D-glucopyranose · ligand · chains A
VJ1 · 2-deoxy-3-O-[(1R,3R)-1,3-dihydroxytetradecyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-1-O-phosphono-alpha-D-glucopyranose · ligand · chains A
3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine · ligand · chains A
KDO · 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid · sugar · chains A
SO4 · Sulfate ion · ion · 8 copies · chains A
PG4 · Tetraethylene glycol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6XLP · Structure of the essential inner membrane lipopolysaccharide-PbgA complex · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C3T3G2
Elsewhere: RCSB PDB 6XLP · PDBe 6XLP · UniProt C3T3G2

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