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Ligand · VJ4

VJ4 · 2-deoxy-2-{[(1S,3R)-1-hydroxy-3-(pentanoyloxy) undecyl]amino}-4-O-phosphono-alpha-D-glucopyranose

VJ4, 2-deoxy-2-{[(1S,3R)-1-hydroxy-3-(pentanoyloxy) undecyl]amino}-4-O-phosphono-alpha-D-glucopyranose (C22 H44 N O11 P, 529.6 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its…

Component
VJ4
Formula
C22 H44 N O11 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

VJ4 in 2 structures; the first of them:

  • 6XLP · Structure of the essential inner membrane lipopolysaccharide-PbgA complex · VJ4 B1 · binds MET212
  • 6XLP · Structure of the essential inner membrane lipopolysaccharide-pbga complex · VJ4 B1 · binds MET212

Residues it binds most

MET 2 (residue and the binding sites it lines).

Found with

  • 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine
  • OLB · (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
  • VJ1 · 2-deoxy-3-O-[(1R,3R)-1,3-dihydroxytetradecyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-1-O-phosphono-alpha-D-glucopyranose
  • KDO · 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
  • SO4 · Sulfate ion
  • PG4 · Tetraethylene glycol

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