Ligand · VJ1
VJ1 · 2-deoxy-3-O-[(1R,3R)-1,3-dihydroxytetradecyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-1-O-phosphono-alpha-D-glucopyranose
VJ1, 2-deoxy-3-O-[(1R,3R)-1,3-dihydroxytetradecyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-1-O-phosphono-alpha-D-glucopyranose (C34 H68 N O12 P, 713.9 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every…
- Component
- VJ1
- Formula
- C34 H68 N O12 P
- Class
- ligand
- Structures
- 2
- PDB entries
- 1
Binding sites
VJ1 in 2 structures; the first of them:
- 6XLP · Structure of the essential inner membrane lipopolysaccharide-PbgA complex · VJ1 B2 · binds PHE181, ILE182, HIS185, VAL186, ILE189, TRP190, TYR210, PRO211 and 7 more
- 6XLP · Structure of the essential inner membrane lipopolysaccharide-pbga complex · VJ1 B2 · binds PHE181, ILE182, HIS185, VAL186, ILE189, TRP190, TYR210, PRO211 and 7 more
Residues it binds most
ARG 2, ILE 2, PHE 2, ALA 2, HIS 2, LEU 2, MET 2, PRO 2, THR 2, TRP 2 (residue and the binding sites it lines).
Found with
- 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine
- OLB · (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate
- VJ4 · 2-deoxy-2-{[(1S,3R)-1-hydroxy-3-(pentanoyloxy) undecyl]amino}-4-O-phosphono-alpha-D-glucopyranose
- KDO · 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
- SO4 · Sulfate ion
- PG4 · Tetraethylene glycol
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