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MolNFT v1 · #169387 · protein

Galactose-bound structure of marinomonas primoryensis PA14 carbohydrate-binding domain

6XAC · Antifreeze protein: “Galactose-bound structure of marinomonas primoryensis PA14 carbohydrate-binding domain”. X-ray diffraction, 2 ligands (GAL, CA). MolNFT v1 #169387 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
6XAC
Type
protein
Length
184 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Antifreeze protein
UniProt
A1YIY3
Ligands
GAL, CA

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 44% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AAntifreeze proteinprotein18412% helix, 44% strandA1YIY3

Ligands and binding sites

  • GAL · beta-D-galactopyranose · sugar · chains A
  • CA · Calcium ion · metal · 7 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 6XAC · Galactose-bound structure of Marinomonas primoryensis PA14 carbohydrate-binding domain · the same entry in another collection · chain A against A, TM-score 1.00

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