MolNFT v1 · #169304 · protein
Crystal structure of the human nudix hydrolase NUDT16 in complex with FAD
6X7U: “Crystal structure of the human nudix hydrolase NUDT16 in complex with FAD”. X-ray diffraction, 3 ligands (FAD, AMP, MN). MolNFT v1 #169304 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6X7U
- Type
- protein
- Length
- 323 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q96DE0
- Ligands
- FAD, AMP, MN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 162 | — | Q96DE0 |
| C | — | protein | 161 | — | Q96DE0 |
Ligands and binding sites
- FAD · Flavin-adenine dinucleotide · ligand · chains A, C
- AMP · Adenosine monophosphate · ligand · chains C
- MN · Manganese (II) ion · metal · 4 copies · chains A, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6X7U · Crystal Structure of the Human Nudix Hydrolase Nudt16 in complex with FAD · the same entry in another collection · chain A against A, TM-score 1.00
- Q96DE0 · AlphaFold monomer V2.0 prediction for U8 snorna-decapping enzyme (Q96DE0) · a predicted model of the same protein · chain C against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96DE0
- Elsewhere: RCSB PDB 6X7U · PDBe 6X7U · UniProt Q96DE0
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