MolNFT v1 · #169252 · protein
Human alpha-1,6-fucosyltransferase (FUT8) bound to GDP and NM5M2-asn
6X5U: “Human alpha-1,6-fucosyltransferase (FUT8) bound to GDP and NM5M2-asn”. X-ray diffraction, 4 ligands (GDP, NAG, MAN). MolNFT v1 #169252 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6X5U
- Type
- protein
- Length
- 3,738 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9BYC5
- Ligands
- GDP, NAG, MAN, BMA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 468 | — | Q9BYC5 |
| B, D, E, F, G, H | — | protein | 467 | — | Q9BYC5 |
Ligands and binding sites
- GDP · Guanosine-5'-diphosphate · ligand · 8 copies · chains A, B, C, D, E, F, G, H
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 20 copies · chains A, B, C, D, E, F, G, H
- MAN · alpha-D-mannopyranose · sugar · 14 copies · chains A, B, E, C, D, F, G, H
- BMA · beta-D-mannopyranose · sugar · 8 copies · chains A, B, E, C, D, F, G, H
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6X5U · Human Alpha-1,6-fucosyltransferase (FUT8) bound to GDP and NM5M2-Asn · the same entry in another collection · chain D against D, TM-score 1.00
- Q9BYC5 · AlphaFold monomer V2.0 prediction for alpha-(1,6)-fucosyltransferase (Q9BYC5) · a predicted model of the same protein · chain D against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9BYC5
- Elsewhere: RCSB PDB 6X5U · PDBe 6X5U · UniProt Q9BYC5
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