MolNFT v1 · #169243 · protein
Crystal structure of CODH/ACS with carbon monoxide bound to the a- cluster
6X5K: “Crystal structure of CODH/ACS with carbon monoxide bound to the a- cluster”. X-ray diffraction, 5 ligands (SF4, XCC, NI). MolNFT v1 #169243 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6X5K
- Type
- protein
- Length
- 5,598 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P27989, P27988
- Ligands
- SF4, XCC, NI, MG, CMO
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | — | protein | 672 | — | P27989 |
| M, N, P | — | protein | 728 | — | P27988 |
| O | — | protein | 726 | — | P27988 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 10 copies · chains A, B, C, D, M, N, O, P
- XCC · FE(4)-NI(1)-S(4) cluster · ligand · 4 copies · chains A, B, C, D
- NI · Nickel (II) ion · metal · 8 copies · chains M, N, O, P
- MG · Magnesium ion · metal · chains N
- CMO · Carbon monoxide · ion · 3 copies · chains M, N, P
- PGE · Triethylene glycol · additive · chains A, B
- PG5 · 1-methoxy-2-[2-(2-methoxy-ethoxy]-ethane · additive · chains C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6X5K · Crystal structure of CODH/ACS with carbon monoxide bound to the A-cluster · the same entry in another collection · chain P against P, TM-score 1.00
- P27989 · AlphaFold monomer V2.0 prediction for carbon monoxide DEHYDROGENASE/ACETYL-CoA synthase… · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P27989
- Every structure of UniProt P27988
- Elsewhere: RCSB PDB 6X5K · PDBe 6X5K · UniProt P27989 · UniProt P27988
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