MolNFT v1 · #169042 · protein + RNA
E. COLI 50S ribosome bound to compounds 47 and VS1
6WYV: “E. COLI 50S ribosome bound to compounds 47 and VS1”. Electron microscopy, 1 ligand (O7S). MolNFT v1 #169042 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6WYV
- Type
- protein + RNA
- Length
- 3,986 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P60422, A0A037Y8L6, D7Z9F6, P60438, D7ZET0
- Ligands
- O7S
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| I | — | rna | 2897 | — | — |
| J | — | rna | 118 | — | — |
| K | — | protein | 271 | — | P60422 |
| L | — | protein | 144 | — | A0A037Y8L6 |
| M | — | protein | 201 | — | D7Z9F6 |
| N | — | protein | 206 | — | P60438 |
| O | — | protein | 142 | — | D7ZET0 |
| C | — | protein | 7 | — | — |
Ligands and binding sites
- O7S · (3r,4r,5e,10e,12e,14s,16r,26ar)-16-fluoro-14-hydroxy-12-methyl-3-(propan-2-yl)-4-(prop-2-en-1-yl)-3,4,8,9, 14,15,16,17,24,25,26,26A-dodecahydro-1H,7H,22H-21,18-(azeno)pyrrolo[2,1-C][1,8,4, 19]dioxadiazacyclotetracosine-1,7,22-trione · ligand · chains I, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6WYV · E. coli 50S ribosome bound to compounds 47 and VS1 · the same entry in another collection · chain I against I, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P60422
- Every structure of UniProt A0A037Y8L6
- Every structure of UniProt D7Z9F6
- Every structure of UniProt P60438
- Every structure of UniProt D7ZET0
- Elsewhere: RCSB PDB 6WYV · PDBe 6WYV · UniProt P60422 · UniProt A0A037Y8L6 · UniProt D7Z9F6 · UniProt P60438 · UniProt D7ZET0
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