MolNFT v1 · #169030 · protein

Cryo-EM structure of the gltph L152C-G321C mutant in the intermediate state

6WYJ · Glutamate transporter homolog: “Cryo-EM structure of the gltph L152C-G321C mutant in the intermediate state”. Electron microscopy, 1 ligand (ASP), 7 pockets (best druggability 0.68). MolNFT v1 #169030 on GenesisL1: 3D structure…

PDB: 6WYJ
Type: protein
Length: 397 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glutamate transporter homolog
UniProt: O59010
Ligands: ASP
Pockets: 7 · best druggability 0.68

Structure

electron microscopy · 1 distinct chain · 81% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glutamate transporter homolog	protein	397	81% helix, 0% strand	O59010

Ligands and binding sites

ASP · Aspartic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.68	0.97	18	ASP
2	309	0.54	0.74	33	empty
3	194	0.48	0.75	33	empty
4	79	0.42	0.79	14	empty
5	58	0.33	0.76	12	empty

Compared structures

6WYJ · Cryo-EM structure of the GltPh L152C-G321C mutant in the intermediate state · the same entry in another collection · chain A against A, TM-score 1.00
O59010 · AlphaFold monomer V2.0 prediction for glutamate transporter homolog (O59010) · a predicted model of the same protein · chain A against A, TM-score 0.86

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O59010
Elsewhere: RCSB PDB 6WYJ · PDBe 6WYJ · UniProt O59010

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