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MolNFT v1 · #168758 · protein

2.0A ångström A2A adenosine receptor structure using xfel data collected in helium atmosphere.

6WQA · Adenosine receptor A2A/SOLUBLE cytochrome B562 chimera: “2.0A ångström A2A adenosine receptor structure using xfel data collected in helium atmosphere.”. X-ray diffraction, 5 ligands (OLA, CLR, ZMA), 4 pockets (best druggability…

PDB
6WQA
Type
protein
Length
391 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Adenosine receptor A2A/SOLUBLE cytochrome B562 chimera
UniProt
P29274, P0ABE7
Ligands
OLA, CLR, ZMA, OLB, NA
Pockets
4 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 85% helix, 2% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AAdenosine receptor A2A/SOLUBLE cytochrome B562 chimeraprotein39185% helix, 2% strandP29274, P0ABE7

Ligands and binding sites

  • OLA · Oleic acid · ligand · 15 copies · chains A
  • CLR · Cholesterol · ligand · 3 copies · chains A
  • ZMA · 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-A][1,3, 5]triazin-5-yl)amino]ethyl}phenol · ligand · chains A
  • OLB · (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · ligand · chains A
  • NA · Sodium ion · metal · chains A
  • OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 5 copies · chains A
  • GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
13240.750.8641ZMA, OLA
21750.490.7726empty
3810.410.7815OLA
4590.300.7516empty

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

  • 6WQA · 2.0A angstrom A2a adenosine receptor structure using XFEL data collected in helium… · the same entry in another collection · chain A against A, TM-score 1.00
  • P29274 · AlphaFold monomer V2.0 prediction for adenosine receptor A2A (P29274) · a predicted model of the same protein · chain A against A, TM-score 0.78
  • P0ABE7 · AlphaFold monomer V2.0 prediction for soluble cytochrome B562 (P0ABE7) · a predicted model of the same protein · chain A against A, TM-score 0.26

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