MolNFT v1 · #167654 · protein + RNA

Crystal structure of RNase H/RNA/PS-aso complex at an atomic level

6VRD: “Crystal structure of RNase H/RNA/PS-aso complex at an atomic level”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #167654 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6VRD
Type: protein + RNA
Length: 189 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: O60930
Ligands: SO4

Structure

x-ray diffraction · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	149	—	O60930
B	—	rna	20	—	—
C	—	rna	20	—	—

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A, C
GOL · Glycerol · additive · chains A
PEG · Di(hydroxyethyl)ether · additive · chains C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6VRD · Crystal structure of RNase H/RNA/PS-ASO complex at an atomic level · the same entry in another collection · chain A against A, TM-score 1.00
O60930 · AlphaFold monomer V2.0 prediction for ribonuclease H1 (O60930) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O60930
Elsewhere: RCSB PDB 6VRD · PDBe 6VRD · UniProt O60930

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