MolNFT v1 · #167601 · protein

Crystal structure of the C-terminal domain of denr

6VPR: “Crystal structure of the C-terminal domain of denr”. X-ray diffraction, 3 ligands (HG, SO4, PO4). MolNFT v1 #167601 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6VPR
Type: protein
Length: 171 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: O43583
Ligands: HG, SO4, PO4

Structure

x-ray diffraction · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	85	—	O43583
B	—	protein	86	—	O43583

Ligands and binding sites

HG · Mercury (II) ion · metal · 4 copies · chains A, B
SO4 · Sulfate ion · ion · 3 copies · chains A, B
PO4 · Phosphate ion · ion · chains B
TLA · L(+)-tartaric acid · additive · 4 copies · chains A, B
ACT · Acetate ion · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6VPR · Crystal structure of the C-terminal domain of DENR · the same entry in another collection · chain A against A, TM-score 1.00
O43583 · AlphaFold monomer V2.0 prediction for density-regulated protein (O43583) · a predicted model of the same protein · chain A against A, TM-score 0.78

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O43583
Elsewhere: RCSB PDB 6VPR · PDBe 6VPR · UniProt O43583

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