MolNFT v1 · #167600 · protein

Crystal structure of the C-terminal domain of denr

6VPQ: “Crystal structure of the C-terminal domain of denr”. X-ray diffraction, 2 ligands (MG, CA). MolNFT v1 #167600 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6VPQ
Type: protein
Length: 522 residues
Chains: 6
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: O43583
Ligands: MG, CA

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F	—	protein	87	—	O43583

Ligands and binding sites

MG · Magnesium ion · metal · 23 copies · chains A, C, B, F, D, E
CA · Calcium ion · metal · 3 copies · chains B, C
PGE · Triethylene glycol · additive · 11 copies · chains A, B, C, E, F, D
ACT · Acetate ion · additive · 3 copies · chains A, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

6VPQ · Crystal structure of the C-terminal domain of DENR · the same entry in another collection · chain F against F, TM-score 1.00
O43583 · AlphaFold monomer V2.0 prediction for density-regulated protein (O43583) · a predicted model of the same protein · chain D against A, TM-score 0.75

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O43583
Elsewhere: RCSB PDB 6VPQ · PDBe 6VPQ · UniProt O43583

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