MolNFT v1 · #167295 · protein + DNA
Crystal structure of the DNA binding domains of human transcription factor erg, human RUNX2 bound to core binding factor beta (cbfb), in complex with 16MER DNA cagaggatgtggcttc
6VGE: “Crystal structure of the DNA binding domains of human transcription factor erg, human RUNX2 bound to core…”. X-ray diffraction. MolNFT v1 #167295 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VGE
- Type
- protein + DNA
- Length
- 368 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P11308, Q13950, Q13951
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 98 | — | P11308 |
| B | — | dna | 16 | — | — |
| C | — | dna | 16 | — | — |
| D | — | protein | 117 | — | Q13950 |
| G | — | protein | 121 | — | Q13951 |
Compared structures
- 6VGE · Crystal structure of the DNA binding domains of human transcription factor ERG, human… · the same entry in another collection · chain D against D, TM-score 1.00
- Q13951 · AlphaFold monomer V2.0 prediction for core-binding factor subunit beta (Q13951) · a predicted model of the same protein · chain G against A, TM-score 0.98
- Q13950 · AlphaFold monomer V2.0 prediction for runt-related transcription factor 2 (Q13950) · a predicted model of the same protein · chain D against A, TM-score 0.97
- P11308 · AlphaFold monomer V2.0 prediction for transcriptional regulator erg (P11308) · a predicted model of the same protein · chain A against A, TM-score 0.86
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11308
- Every structure of UniProt Q13950
- Every structure of UniProt Q13951
- Elsewhere: RCSB PDB 6VGE · PDBe 6VGE · UniProt P11308 · UniProt Q13950 · UniProt Q13951
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