MolNFT v1 · #167294 · protein + DNA
Crystal structure of the DNA binding domain (dbd) of human FLI1 and the complex of the dbd of human RUNX2 with core binding factor beta (cbfb), in complex with 16MER DNA cagaggatgtggcttc
6VGD: “Crystal structure of the DNA binding domain (dbd) of human FLI1 and the complex of the dbd of human RUNX2…”. X-ray diffraction. MolNFT v1 #167294 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6VGD
- Type
- protein + DNA
- Length
- 368 residues
- Chains
- 5
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q01543, Q13950, Q13951
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 98 | — | Q01543 |
| B | — | dna | 16 | — | — |
| C | — | dna | 16 | — | — |
| D | — | protein | 117 | — | Q13950 |
| G | — | protein | 121 | — | Q13951 |
Compared structures
- 6VGD · Crystal structure of the DNA binding domain (DBD) of human FLI1 and the complex of the… · the same entry in another collection · chain C against C, TM-score 1.00
- Q13951 · AlphaFold monomer V2.0 prediction for core-binding factor subunit beta (Q13951) · a predicted model of the same protein · chain G against A, TM-score 0.98
- Q13950 · AlphaFold monomer V2.0 prediction for runt-related transcription factor 2 (Q13950) · a predicted model of the same protein · chain D against A, TM-score 0.97
- Q01543 · AlphaFold monomer V2.0 prediction for friend leukemia integration 1 transcription factor… · a predicted model of the same protein · chain A against A, TM-score 0.87
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q01543
- Every structure of UniProt Q13950
- Every structure of UniProt Q13951
- Elsewhere: RCSB PDB 6VGD · PDBe 6VGD · UniProt Q01543 · UniProt Q13950 · UniProt Q13951
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