MolNFT v1 · #166868 · protein + DNA
Structure of HIV cleaved synaptic complex (csc) intasome bound with magnesium and insti XZ419 (compound 4C)
6V3K: “Structure of HIV cleaved synaptic complex (csc) intasome bound with magnesium and insti XZ419 (compound 4C)”. Electron microscopy, 3 ligands (QUW, MG, ZN). MolNFT v1 #166868 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 6V3K
- Type
- protein + DNA
- Length
- 649 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P39476, Q76353
- Ligands
- QUW, MG, ZN
Structure
electron microscopy · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 259 | — | P39476, Q76353 |
| B | — | protein | 242 | — | P39476, Q76353 |
| C | — | protein | 65 | — | P39476, Q76353 |
| D | — | protein | 47 | — | P39476, Q76353 |
| E | — | dna | 19 | — | — |
| F | — | dna | 17 | — | — |
Ligands and binding sites
- QUW · 4-azanyl-N-[[2,4-bis(fluoranyl)phenyl]methyl]-1-oxidanyl-2-oxidanylidene-6-(5-oxidanylpentyl)-1,8-naphthyridine-3-carboxamide · ligand · chains A, D, E, F
- MG · Magnesium ion · metal · 2 copies · chains A, F
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6V3K · Structure of HIV cleaved synaptic complex (CSC) intasome bound with magnesium and INSTI… · the same entry in another collection · chain F against F, TM-score 1.00
- P39476 · AlphaFold monomer V2.0 prediction for DNA-binding protein 7D (P39476) · a predicted model of the same protein · chain D against A, TM-score 0.51
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P39476
- Every structure of UniProt Q76353
- Elsewhere: RCSB PDB 6V3K · PDBe 6V3K · UniProt P39476 · UniProt Q76353
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