UniProt P39476
MoeN5,DNA-binding protein 7d (P39476)
MoeN5,DNA-binding protein 7d (UniProt P39476): 30 experimental structures and 1 predicted model on GenesisL1, 11 ligands bound, 7 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P39476
- Protein
- MoeN5,DNA-binding protein 7d
- Experimental structures
- 30
- Predicted models
- 1
- Ligands
- 11
- Pockets
- 7 · 1 record with a druggable one
Structures
31 records of P39476 in the MolNFT archive: 30 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1BBX | Non-specific protein-DNA interactions in the SSO7D-DNA complex, NMR, 1 structure | solution nmr | C, D | — | — |
| 1BBX | Non-specific protein-DNA interactions in the SSO7D-DNA complex, NMR, 1 structure | solution nmr | C, D | — | — |
| 1C8C | Crystal structures of the chromosomal proteins SSO7D/SAC7D bound to DNA containing T-G mismatched… | x-ray diffraction | A | — | — |
| 1C8C | Crystal structures of the chromosomal proteins SSO7D/SAC7D bound to DNA containing T-G mismatched… | x-ray diffraction | A | — | — |
| 1JIC | Solution NMR structure of recombinant SSO7D with RNase activity, minimized average structure | solution nmr | A | — | — |
| 1JIC | Solution NMR structure of recombinant SSO7D with RNase activity, minimized average structure | solution nmr | A | — | — |
| 5B02 | Structure of the prenyltransferase MoeN5 with a fusion protein tag of Sso7d | x-ray diffraction | A, B, C, D | — | — |
| 5B02 | Structure of the prenyltransferase MOEN5 with a fusion protein tag of SSO7D | x-ray diffraction | A, B, C, D | — | — |
| 5B03 | Structure of MoeN5-Sso7d fusion protein in complex with geranyl pyrophosphate | x-ray diffraction | A, B, C, D | — | — |
| 5B03 | Structure of MOEN5-SSO7D fusion protein in complex with geranyl pyrophosphate | x-ray diffraction | A, B, C, D | — | — |
| 5B0I | Structure of MoeN5-Sso7d fusion protein in complex with beta-octyl glucoside | x-ray diffraction | A, B, C, D | — | — |
| 5B0I | Structure of MOEN5-SSO7D fusion protein in complex with beta-octyl glucoside | x-ray diffraction | A, B, C, D | — | — |
| 5B0J | Structure of MoeN5-Sso7d fusion protein in complex with beta-undecyl maltoside | x-ray diffraction | A, B, C, D | UMQ | 7 (best 0.82) |
| 5B0J | Structure of MOEN5-SSO7D fusion protein in complex with beta-undecyl maltoside | x-ray diffraction | A, B, C, D | — | — |
| 5B0K | Structure of MOEN5-SSO7D fusion protein in complex with beta-decyl maltoside | x-ray diffraction | A, B, C, D | — | — |
| 5B0L | Structure of MoeN5-Sso7d fusion protein in complex with beta-nonyl glucoside | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| 5B0L | Structure of MOEN5-SSO7D fusion protein in complex with beta-nonyl glucoside | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| 5B0M | Structure of MoeN5-Sso7d fusion protein in complex with beta-dodecyl maltoside | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| 5B0M | Structure of MOEN5-SSO7D fusion protein in complex with beta-dodecyl maltoside | x-ray diffraction | A, B, C, D, E, F, G, H | — | — |
| 5GWV | Structure of MOEN5-SSO7D fusion protein in complex with a substrate analogue | x-ray diffraction | A, B, C, D | — | — |
| 5GWW | Structure of MoeN5-Sso7d fusion protein in complex with a permethylated substrate analogue | x-ray diffraction | A, B, C, D | 7B5 | — |
| 5GWW | Structure of MOEN5-SSO7D fusion protein in complex with a permethylated substrate analogue | x-ray diffraction | A, B, C, D | — | — |
| 6J8V | Structure of MOEN5-SSO7D fusion protein in complex with ligand 2 | x-ray diffraction | A, B, C, D | FAR | — |
| 6J8W | Structure of MOEN5-SSO7D fusion protein in complex with lig 1 | x-ray diffraction | A, B, C, D | C0X | — |
| 6PUT | Structure of HIV cleaved synaptic complex (csc) intasome bound with calcium | electron microscopy | A, B, C, D | CA, ZN | — |
| 6PUW | Structure of HIV cleaved synaptic complex (csc) intasome bound with magnesium and bictegravir (bic) | electron microscopy | A, B, C, D | MG, ZN, KLQ | — |
| 6PUY | Structure of HIV cleaved synaptic complex (csc) intasome bound with magnesium and insti XZ426… | electron microscopy | A, B, C, D | MG, ZN, OZ1 | — |
| 6PUZ | Structure of HIV cleaved synaptic complex (csc) intasome bound with magnesium and insti XZ446… | electron microscopy | A, B, C, D | MG, ZN, XXJ | — |
| 6V3K | Structure of HIV cleaved synaptic complex (csc) intasome bound with magnesium and insti XZ419… | electron microscopy | A, B, C, D | MG, ZN, QUW | — |
| 6VOY | Cryo-EM structure of HTLV-1 instasome | electron microscopy | A, B, C, D | ZN, MG | — |
| P39476 | AlphaFold monomer V2.0 prediction for DNA-binding protein 7D (P39476) | predicted | A | — | — |
Ligands
- ZN · Zinc ion · in 6 records
- MG · Magnesium ion · in 5 records
- 7B5 · methyl (2R)-3-dimethoxyphosphoryloxy-2-[(2Z,6E)-3,7,11-trimethyldodeca-2,6,10-trienoxy]propanoate · in 1 record
- C0X · (2S)-3-dimethoxyphosphoryloxy-2-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trienoxy]propanoic acid · in 1 record
- CA · Calcium ion · in 1 record
- FAR · Farnesyl · in 1 record
- KLQ · Bictegravir · in 1 record
- OZ1 · 4-amino-N-[(2,4-difluorophenyl)methyl]-1-hydroxy-6-(6-hydroxyhexyl)-2-oxo-1,2-dihydro-1,8-naphthyridine-3-carboxamide · in 1 record
- QUW · 4-azanyl-N-[[2,4-bis(fluoranyl)phenyl]methyl]-1-oxidanyl-2-oxidanylidene-6-(5-oxidanylpentyl)-1,8-naphthyridine-3-carboxamide · in 1 record
- UMQ · Undecyl-maltoside · in 1 record
- XXJ · 4-azanyl-N-[[2,4-bis(fluoranyl)phenyl]methyl]-1-oxidanyl-2-oxidanylidene-6-[2-(phenylsulfonyl)ethyl]-1,8-naphthyridine-3-carboxamide · in 1 record
Experiment against prediction
- 5B0I chain D against the predicted model P39476: TM-score 0.19, RMSD 0.82 Å
- 5B0I chain D against the predicted model P39476: TM-score 0.19, RMSD 0.82 Å
- 5B0L chain B against the predicted model P39476: TM-score 0.19, RMSD 0.70 Å
- 5B0L chain B against the predicted model P39476: TM-score 0.19, RMSD 0.70 Å
- 1C8C chain A against the predicted model P39476: TM-score 0.93, RMSD 0.92 Å
- 1C8C chain A against the predicted model P39476: TM-score 0.93, RMSD 0.92 Å
- 5B0J chain D against the predicted model P39476: TM-score 0.19, RMSD 0.99 Å
- 5B0J chain D against the predicted model P39476: TM-score 0.19, RMSD 0.99 Å
- 5B0L chain H against the predicted model P39476: TM-score 0.19, RMSD 0.73 Å
- 5B0L chain H against the predicted model P39476: TM-score 0.19, RMSD 0.73 Å
Elsewhere
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