Ligand · GPP
GPP · Geranyl diphosphate
GPP, Geranyl diphosphate (C10 H20 O7 P2, 314.2 g/mol), in the MolNFT structures on GenesisL1: bound in 12 records (10 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.
- Component
- GPP
- Formula
- C10 H20 O7 P2
- Class
- ligand
- Structures
- 12
- PDB entries
- 10
Binding sites
GPP in 12 structures; the first of them:
- 5GP0 · Crystal structure of geraniol-NUDX1 complex · GPP E202 · binds ALA11, VAL13, ARG27, SER29, HIS42, THR74, ASN76, PHE78 and 4 more
- 6PGN · PagF single mutant with GPP · GPP A402 · binds ARG65, LYS136, HIS138, ARG140, LEU170, GLU184, TYR186, GLU188 and 6 more
- 6YPF · NUDIX1 hydrolase from Rosa x hybrida in complex with geranyl pyrophosphate · GPP A201 · binds ALA18, VAL20, ARG34, LEU38, SER44, SER47, GLY48, HIS49 and 6 more
- 8A73 · PcIDS1 in complex with Mn2+ and GPP · GPP A504 · binds GLY132, LYS133, LYS134, THR135, ARG136, SER139, GLN172, ARG189 and 8 more
- 8A78 · PcIDS1_F315A in complex with Mg2+/Mn2+ and GPP · GPP A505 · binds LEU175, LEU176, MET178, ASP179, ASP180, ASP183, ARG188, THR243 and 9 more
- 8A7L · PcIDS1 in complex with Mg2+, GPP, and ZOL · GPP A506 · binds THR131, GLY132, LYS133, ARG136, GLN172, LEU176, ARG189, GLY190 and 7 more
- 8A7U · PcIDS1_F315D in complex with Mg2+ and GPP · GPP A506 · binds LEU175, LEU176, MET178, ASP179, ASP180, ASP183, ARG188, THR243 and 9 more
- 5XK8 · Crystal structure of isosesquilavandulyl diphosphate synthase from streptomyces sp.… · GPP A501 · binds PRO8, ASP9, GLY10, MET11, ARG12, ARG13, TYR26, VAL52 and 7 more
- 6PGN · Pagf single mutant with gpp · GPP A402 · binds ARG65, LYS136, HIS138, ARG140, LEU170, GLU184, TYR186, GLU188 and 6 more
- 6YPF · NUDIX1 hydrolase from rosa X hybrida in complex with geranyl pyrophosphate · GPP A201 · binds ALA18, VAL20, ARG34, LEU38, SER44, SER47, GLY48, HIS49 and 6 more
- 7FHB · Structure of prenyltransferase from streptomyces sp. (strain CL190) with bound gpp · GPP A401 · binds VAL47, SER51, SER64, ALA108, LYS119, TYR121, PHE123, ASN173 and 5 more
- 7TPG · Single-particle cryo-EM structure of the waal O-antigen ligase in its ligand bound state · GPP H301 · binds ARG191, GLY192, VAL195, VAL199, ARG265, ILE373, THR377, TRP106
Residues it binds most
ARG 20, TYR 16, PHE 13, LEU 11, SER 13, ALA 13, LYS 9, ASP 7, VAL 13, ASN 11 (residue and the binding sites it lines).
Found with
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